It's working!!! I went out to examine the unit again, yes there is a little soot beneath the burners, but not a ton. It seems the burners are held on with 2 bolts on each side and then kept in place by the gas line connection. After some thinking, I decided I'm definitely not going to mess with the gas line to pull out the burners.
So instead I took off the cover again and was looking down above the heat exchange, it didn't seem too dirty below, as best I could see in . I decided to get out my backpack leaf blower and blow down from above. I understood I might actually blow the spot into the holes of the burner, but I decided to take a chance.
After a good blowout... no more flame rollout. There is a small flame below the fuse, but I was able to leave my hand on the fuse and it was not hot at all. Heater worked for the past few hours.
For good measure I will likely buy the OEM thermal fuse from the pool store.
Hopefully this might help someone else in the future and I will be covering my heater in the fall.
Thanks