I'm not being trite or rude, so please don't take it that way. As I indicated early in this thread, get a cheap sump pump. Can be used to drain the pool easily, if your pump goes out you can use it to keep water circulating and allow you to add chlorine while pump is being fixed...lots of uses.
THAT being said, you are correct, if you understand your equipment, you can use it to drain.
I'm not sure exactly where you are in the process. Let's go back to here:
Orange T handle open, correct?
Water coming out of the red handled spigot and that spigot is open, correct?
After the separator, the line goes to a check valve, then where does the PVC go? That is not in your media.
When you say "waste mode" of the MPV, with both the valves of the waste line open for about 30-40 mins at least. Which valves are you referencing?