Oh good. I was afraid you drained it.By "my pool is empty now" i meant there is nothing in there but water
High chlorine will fade a liner. Very low pH will wrinkle it.
Not sure what the brown spots would be. It's not from regular liquid chlorine and the algae would not stain it.
Do you have trees nearby, dropping stuff in the pool?
Did you pour salt in the pool? Some people have complained of staining from the Clorox brand.
Have you added anything else besides plain-old no-additives liquid chlorine?
How often are you cleaning the filter? Is the pump running 24/7? Is the SWG running (should not be)?
Are you keeping the water at SLAM levels all day and night (as best you can)?
How many days have you been in this level of the SLAM where the water is almost clear and mounds of dead algae accumulate on the bottom?
You might be at the place where you need "P.O.P" (pool owner patience)