I believe someone retrofitted a spa jet pump into a spa with a single drain.
Refer to the picture below. Everything is subject to your verification and is my speculation.
The green diverter valve is your POOL/SPA suction. In the picture the diverter is choking off water flow into the main pump which is not good and may be causing your pulses. Turn that handle clockwise so that OFF aligns with your spa suction pipe. Now you should pull all the water from your pool and none from the spa.
The yellow diverter valve is your skimmer/main drain balance valve. Pipes are labeled A and B. You need to determine which pipe goes to the skimmers and which goes to the main drain.
Red diverter valve is your POOL/SPA return valve. Right now it is set for 50/50 flow between pool and spa. The diverter is blocking both pipes and is not an efficient setting but we can get back to that later.
With your setup by adjusting the red and green valves you can:
- Filter and heat your pool and spa with your spa spillover running (Green valve OFF over SPA suction pie; red valve split 50/50 between spa and pool)
- Filter and heat your spa only (green valve OFF over POOL suction pipe; red valve OFF over POOL return pipe)
- Run your spa jets and NOT filter and heat your spa (green valve OFF over SPA suction; main pump off; jet pump on)
Trying to run both pumps at the same time and filter and heat your spa and have the spa jets running is where the spa suction conflict will arise. It may or may not work.
We can discuss other permutations of valve settings.
The pool can be heated independently of the spa.
The spa can be heated independently of the pool.
The only kludge in this was the sharing of the spa suction drain to have a separate spa jet pump.
I would spring for new handles for your diverter valves.
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