That endpoint process is a technique for ALL drops based color change tests (FC, CC, TA, CH) and perhaps needs more emphasis throughout TFP. It has no affect on the CC's test or any of the other tests.
What you are implying here is that R-003 somehow neutralizes the effects of the R-0871 drops. As I said, I'm not a chemist. So, I didn't know for sure exactly what these reagents do. However, I am an engineer. So, I conducted a little experiment of my own to find out. Let's see, I need some water with CC's in it. Ah, tap water! And, my reagents are all going to be expired before next season anyway. So, may as well waste them on some science.
Starting samples (tests conducted according to TFP instructions, not Dave's).
Our pool water: FC=3.5 CC=0.5
Our tap water: FC=0 CC=2.0
Mix (50/50): FC=2.0 CC=1.0
The above numbers all make perfect sense. We have a 50/50 dilution of CC=2.0 water. And, the result is CC=1.0.
So, the mix water is perfect for this experiment. If I use Dave's technique and add one extra drop in the FC part of the test to confirm clearness, the final result is:
Mix(50/50): FC=2.0 CC=0.5
And, to solidify the experiment, I did the same thing. But, added two extra drops of R-0871:
Mix(50/50): FC=2.0 CC=0
And, finally, to put this to bed, I added 4 drops of R-0871 to a tap water sample (which is clear to begin with after adding R-0870 powder) before adding R-0003. This resulted in a reading of CC=0.
So, in conclusion, any drops of R-0781 added during the FC portion of the test DO carry over into the CC test. R-003 does NOT do anything to neutralize these drops.
Also, if you looked at the results from the "mix" tests. Note that a CC=0.5 using Dave's technic probably wouldn't be of any concern. However, the actual result of CC=1.0 might raise an eyebrow. I'm not trying to argue that what Dave suggests is a bad idea. But, it DOES have an effect on the follow-on CC test as I suspected. In other words, if you use Dave's technic, you need to add 0.5 to your CC result.