If you're shaking it so vigorously that you're getting air on the probe it definitely will. I typically swirl the probe around directly in the pool itself. It always stabilizes quickly but if I swirl too vigorously it gets air on it and the value changes.
I was shaking the PH probe pretty vigorously, value seemed to climb a tenth or two every time I did. I'll modify my procedure to avoid that, thanks for confirming.
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