Brent.
What I believe that James is recommending, and what makes the most sense to me, is to shut off the water going to the Spa when in the pool mode..
In the Pool mode all the water should be sucked from the Pool and returned only to the pool.
In the Spa mode all the water should be sucked from the Spa and returned only to the Spa
In the Spillover mode, your automation will rotate the valves so that all the water is sucked from the Pool but will return all the water to the Spa.. Obviously this will cause a big spillover.
Instead of running water into your spa all the time to keep the water fresh, you just schedule your automation to go into the spillover mode a couple of times a day for 20 minutes or so..
Am I correct in saying that when you close the manual valve in your last pic that the water going to the Spa increases?
One final thing and I'll leave you alone..

How many return eyeballs does your pool have and what size is the hole in the eyeball???
Thanks,
Jim R.