Modbus is a specific protocol and this is also used as the native command protocol on the Century Vgreen motors. While Modbus is the protocol there are certain commands such as "set demand (speed)" "go", "stop",etc. that pass information from the control system to the motor. That document you attached doesn't define what those commands are.
In any case the Aqualink system uses a Jandy proprietary protocol with their own set of commands that correspond to the same "set demand", "go" and "stop" commands and those commands are NOT compatible with Modbus protocol.
I found out about this when messing with my Vgreen165 motor as it also doesn't work with the Aqualink system. On that particular motor it is possible to execute some Modbus commands to change the motor's configuration so that it will also support the Jandy protocol and commands.
But RS485 native Modbus control will not work with the Jandy Aqualink system.