What speed do you run in normal pool mode? This would be with no cleaner. Based on your comments earlier - your normal pool mode always flows to the pool and to the spa (to have the spillover effect). what speed gives the best spillover to the pool? Can you show a photo of your return plumbing at the equipment pad?
do you have a set schedule for cleaner mode? Or do you manually need to change the valve to operate the cleaner? The best way to have a suctionside cleaner to run is to have only suction from the cleaner line and no other pipes. Maybe show a picture of your pipework on the suction side would help us understand your plumbing.
As Jim indicated - the system will run the higher speed if the systems has 2 functions scheduled for same time.
Here is mine where I have freeze protection at 2000rpm but normally pool is at 1550. However Spa is at 2650 rpm. So in freeze protection the pool will run at 2000rpm and when the spa kicks in it will move up to 2650. When not in freeze protection the pool runs at 1550rpm.
Note - I would enable the pump delay when the valves turn unless you have an issue with losing prime when your pump stops.
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