The Settings -> Intelliflo menu does not show 2 pumps. It just enables me to set the speed for the main Pool circulation pump.
It does not make sense that your old pump will not work like it used to. Just to be clear... You need to have the old pump running and running at the special speed that you saved.. Then while running at that speed, shut the pump off by pushing the Spa Jets (aux 1) button on the EasyTouch.. Do not shut the pump off at the pump.