Good idea Miranda with the dye. I never thought of that before. I can't make heads or tails out of what is going on with your set up. But, I am going to be REAL interested as you progress toward solving your problem.
I took my LQ completely out and am going to clean it all up and start from scratch. I think I will order the other type of valves before I put it back in though. I am also going to try my best to get the TA and PH levels to be where they should be, as I found in another thread about keeping WS away. I do have high CH, probably because of the years of using cal-hypo pucks. I guess that might be causing problems. I would like to use 12% bleach, but the nearset store to buy it is 30 miles away, and we have a Walmart 5 miles away and on the way home from work, so I really want this to work with 6%. The wife is really giving me the evil eye though and said yesterday ...... 'I hope you don't have to order anymore of those valve things, you already got too much invested in something that doesn't work.' Sooooo, I have to be very sneaky about it.

Since I already did the upgrade for 3/8 tubing, I stopped at Lowes and found 1/4"NPT to 1/4" tube barbs to put in the threaded holes I made and convert back to the 1/4 tubing for the other valves. I hope they don't restrict flow too much, especially since they are 90 degree elbows, but that is all I could find. I also think I need to get this going pretty soon, since the only 1/4 NPT plugs I could find were the iron gas pipe plugs. That was to plug the holes in my pipes while I get it ready to re-install. I am sure they will start to rust fairly soon.
IF all that doesn't work, I just may post a video on youtube of me destrying this thing with an axe.

(right about now, that would feel sooooooooooooooooo good! )
Now, I need to work up the courage to do the acid wash. I have a friend that was burnt very badly with acid (not sure what kind) and I have a healthy fear of anything acid. (or should that be 'Unhealthy' fear?)