If the water temperature is below 70F degrees let the water warm up inside before you do the CYA test.
The standard instructions to mix for 30 seconds is not enough time when the water is cold. You can either mix longer, or allow the sample to warm up to room temperature. Best solution is to allow the the sample to warm up first and then shake it for 30 seconds.
Taylor Technologies has run the pH, total alkalinity, calcium hardness, free chlorine, and cyanuric acid tests on known standard solutions at approximately 104°F, 75°F, 60°F, and 40°F. Only at 40°F did the CYA standard solution test higher than its actual value (after accounting for test variability). All other tests were unaffected by temperature differences.