I think you missed my point. On your screen shot - in the upper right it states Pump 1. But pump 1 is the filtration pump and Pump 2 is the Cleaner pump. So what is scheduled for Pump 1 should not affect IFCS - based on what I see.Pump speeds might be deceiving. I've changed them to try to get the IFCS to stop getting water all over the coping. I'm pretty good about taking photos before I mess with things too much and found the attached speeds from March. Maybe they make more sense?
What we do not know is what all those return pipes lead to against that back wall. Is it feasible to track where the output of pump 2 (the one on the right side) leads to? My thinking is that there are 2 suction lines to that pump then there must me 2 return pipes going to the pool that has a valve that allows you to switch between one or the other. I suspect one leads to your octopus device which is your IFCS hub.
Usually a wall drain is used when the suction through it does not need to go through the filter. It is off the floor so no debris enters it - just water. They are used for a waterfall or maybe even the vanishing edge. What you describe makes me think as followsThe main pool has one large circle drain looking thing at the deep end. I'm pretty sure this is the IFCS drain. The basin has 3 things: a drain that is in the center of the basin on the wall, and 2 circle drain looking things at the bottom (so likely connected and considered a set?) on the side closest to the overflow and auto-filler. The spa has 1 drain on the wall, one on the floor.
The large main drain on pool bottom is for main filtration pump - as the IFCS pushes debris to it, you want the filter to capture the debris.
In the basin - the bottom drain must be for the filtration pump as well and the wall drain - not sure.
Since the spa has 2 differeent types of return jets - I am assuming one is high rate and linked to one of the suction drains.
The pump 2 only has Vanishing edge scheduled on it so that should run regardless if filter pump is on or not. I wanted to give you some initial feedback and I am still thinking through your setup design.