I know the pool walls do not look like blue paint. My color choice was the lightest blue specks they offered. Its never been polished. Do you think that the calcium would come off?That is typical blue mottling that happens with dark blue Hydrazoo and other finishes.
If you want to drain the pool you can talk to your contractor about doing another round of polishing the finish to try and even it out. I had that done on my Hydrazoo finish.
Do not expect your finish will look like smooth blue paint. Mottling is part of the character of palster finished.