Definitely have the pool builder bring the plaster manager out to see it. A second acid wash "COULD" help resolve some of the issues you describe, but I'd be surprised if those color variations go away. Did you get a close look at it before the acid wash? Did the colors look splotchy at that point? Mine looked like pale blue plaster with a solid color all over before it was acid washed.
Having little or no pebbles on the corners of the steps, and variable amounts of pebbles across the floor, is unacceptable.
There are several items that could have occurred to make it not look right... 1) colors weren't mixed evenly during install, 2) pebbles weren't mixed evenly during install, 3) application of both wasn't done properly, 4) Acid was uneven or poorly applied.
I watched my acid wash occur... it scared me to death... he basically took buckets of acid and poured them around the tile line as he moved around the pool. Then swept it all into the drains at the end. I had assumed there would be some level of control or sprayer or something, but nope... dump the acid all over the walls was about all they did. :/