This is an enigma and a whirlwind. There are so many factors involved.
Even tho today has been a very hectic one for me, my thoughts kept going back to your pool issues.
No, I did not solve anything! But, as usual, I am full of more questions and my .02

)
First priority is getting your water sanitary and it wouldn't hurt one bit if it was easier to manage.
Is there a possibility of replacing a lot, if not all (water dance), of the water and having metal-free water trucked in? I don't know if that would be cost prohibitive or not, only you know that.
I understand you have well water and that would be used for top off, but if water replacement could happen, then you should be able to fill, add sequesterant, and shock. Shock level would be low w/zero or low CYA in new/partially new water. Based on PoolCalculator.com shock level with zero CYA is 10 and Mustard Algae shock level is 12.
About those dad burn stains. Well, you can enjoy the pool and swim with stains, but the pool has to be properly chlorinated to be sanitary. So, forget the stains until after the algae issue is completely gone
and the water temp is a little lower. You should not have to be doing AA or citric acid treatments often. Also, doing an AA or citric acid treatment immediately following a shock is not a good idea. When you read the instruction in Pool School for the AA treatment, one of the biggies is trying to s l o w l y raise chlorine, which is dang near impossible in the middle of summer in Mississippi!
So, I guess what I am thinking is that if you could possibly start off with metal free water and get everything shocked to absolute perfection, add start-up sequesterant dose (& maintain weekly doses religiously), balance and maintain chemistry, then, when weather cools off some, do the stain removal.
My thinking may be off cuz I am pretty tired, but you gotta get off this merry-go-round and this is the only thing I can think of. I sure hope that this post makes sense to me when I read it later.
Okay, now I have given you something to think about and I hope it helps.
p.s. It makes me suspicious that you know way too much about citric acid and that you order 50# at a time!

I got my eye on you :cyclopsani: