Snider:
You can try and remove as much water as possible. I remove water only in the skimmers with a shop vac, but that is prior to clearing the lines with air. You will need a good shop vac. If you decide to do this, then make sure your plugs are nice and tight (you can not also check for leaks because you will still have water in the lines), but if you are attempting this type of closing, I would highly recommend placing antifreeze (for swimming pools only) in the lines. Then call it a day.
Where do you plan on sucking the water out from (skimmer is an easy one), but what about the suction and return jets? Also, track how much water you remove as well. You could easily clear the lines if you lowered the water below the returns, but then would either have to fill back up slightly or if you have a mesh cover, within a month or so with the rain, you will be back to normal.
Remember, most people with IGP uses air to remove water. Why chance something underground. But with the correct amount of antifreeze in the lines, then you should be fine. The only issue is the antifreeze may cost you as much as an air compressor over a few years. You may need 10-20 bottles. Thanks!