I just completed a similar project replacing an Aqualink panel with the IntelliCenter. You can read my thread on it at…
This thread is for me to work out what I do in upgrading my 20 year old pool equipment. Jandy RS8 automation, 1.5HP SS Pentair pump, Pentair Mastertemp 400 NG heater, IC40 SWG, typical pool/spa combo with spa spillover, Pentair JVA actuators on suctions & return Jandy valves, 1HP pump for spa...
www.troublefreepool.com
I encountered the problems you see of conduit alignment, ground wires not long enough to reach the ground bar, other wires not long enough, etc. Some of the issues turned out to be easier to resolve once I could try different approaches in positioning the panel and conduit.
I used Wago 221 series in-line splices that allowed many splices without cluttering the box….
Inline splicing connector with lever; for all conductor types; 12 AWG (max.); 2-conductor; transparent housing; white cover (4066966120271) Online at WAGO USA!
www.wago.com
Below is the way my install turned out.
Note that to cut the conduit you are going to need to pull the wires out before you cut. You run too high of a risk of nicking the wires if cutting the conduit with the wires in it. You also cannot glue connectors onto the conduit with wires in it.
And if you are able to pull the wires out to cut the conduit and glue flex onto it then you can run new longer wires. I was prepared to do that but it turned out not to be necessary.