Just had a call with the gas company. Turns out my home is set up as a high pressure (2 psi) system as ChristopherDB guessed. So this explains why I have regulators on every branch and why I'm getting sufficient flow even though the supply lines are undersized. The gas company assured me that even though its a 425 meter, the system could handle delivery of over 900 BTU/hour which should be enough for my needs. The supply installation near the pad could still stand to be cleaned up, but it doesn't look to be the root cause of my intermittent heater issues.
I ordered a manometer so I can check the pressure at the output of the gas valve, perhaps that needs some tweaking.
I ordered a manometer so I can check the pressure at the output of the gas valve, perhaps that needs some tweaking.