Sewerage fees are based on water flow usage. So if you drain 10,000 gallons of pool water and refill it, they assume that the 10,000 gallons used to fill the pool represents 10,000 gallons you flushed down the drain and so you get charged for that discharge. The only time sewerage fees are waived in most places is for a new pool fill only and that usually requires documentation from the pool builder.
So if you drain and refill now, you're going to increase your baseline or average water usage and that will increase your sewer fee. You have to check with your local water utility to find out the details.
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