You are thinking the same thing I was at one point. What I had to realize is this; Higher CYA does not mean higher FC. It does mean higher base FC but NOT higher FC usage. Daily usage can be similar regardless of CYA level. (too a certain point, and oversimplified like crazy)
The main way to look at it is the following. There is chlorine unbound to CYA and it is lost from sunlight fairly quickly, losing around half of its amount every hour in direct noontime sun. Then there is chlorine bound to CYA and its loss in sunlight is much slower typically losing less than half over an entire day. So at the same FC/CYA ratio which determines the unbound chlorine level its loss will be the same, but the amount of chlorine bound to CYA lost will be higher at the higher FC level. However...
If the above were all that were going on then one would conclude that a lower FC and CYA level would be better due to less chlorine bound to CYA, but that would be wrong because there is another factor that dominates. Higher CYA levels shield lower depths from the UV in sunlight and this is a rather strong and non-linear effect such that higher FC and CYA levels even with the same proportionate FC/CYA ratio actually lose less absolute FC. Mark did experiments in this post and this post that showed this effect that we had seen in pools but did not understand. We have yet to find any scientific paper confirming this since unfortunately there are none that show the UV spectrum of CYA or chlorine bound to CYA in the relevant 300-370 nm range. I do have detailed UV molar absorption data for chlorine unbound to CYA.