Do you have a single speed pump or a variable speed?
When my pump starts up, it runs at high speed (3450 RPM) for about 10secs in what is called "priming mode" (but my pump is full so it's not really priming) and then it drops down to its normal speed (2500 RPM) and runs. During the "priming" phase, the pressure is obviously higher.
If your filter is not totally full during start up, perhaps it's just reading high until the the water level in there reaches some steady state. Since it quickly seems to reach it's normal operating pressure, I wouldn't sweat the transient value in the beginning.
Glad to hear your chemistry is holding. As for the brown spots, try rubbing a trichlor puck on it to see if it bleaches out. If not, it could be a metal stain and you might need to consider an ascorbic acid (vitamin C) treatment.