I guess I can try removing the Check Valve to make sure that it isn't too tight and maybe it isn't opening up all the way when the pump turns off.
That's a good troubleshooting step.
Is it worth trying to have the system fixed so that the draining is more optimal?
I would say that depends on (1) how old the panels are and (2) how they are connected to the roof. I expect my panels to last about 20 years, give or take. If yours are old, how much money are you willing to put into them for potentially just a few more years, as opposed to putting the repair money into new panels instead. Do you have any idea how old they are? I installed my system myself, and saved about $7K, so if you're handy, it's not to bad (though somewhat dangerous.
And how they are attached might make a difference, too. Does the panel attached to the roofing material, or penetrate it to connect to the rafters. If you move the panels, they'll have to make new penetrations and fix the old ones. That could be a can of worms depending on what type of roof you have and how old
it is. Sorry, lots of variables to that question.
Seems like the installers strapped the two pipes below together
When I asked my panel vendor (a local installer as well) about slanting my panels, they said "Nah, we don't do that." So it's not a surprise yours were short-cutted in that way. The slant is probably more of an issue for climates that have harder freezes, but I didn't want to take the chance so I slanted mine, as it does freeze here some.
I noticed that after the pump is off if I open the Solar Valve open a lot more water gets purged out of the system. Is it expected/normal behavior for the solar valve to be kept closed when the filter stops? Not sure if I would be able to program from my Aqualogic controller to open the solar valve for a period of time after the pump turns off.
Yes, normal. The valve moves to close off water going to the roof. That's what shuts down the solar heating system. That happens whether the filter pump is done for the day or not. The controller determines when to send water to the roof, which might be multiple times per day, and then shuts everything down at the end the filter pump run. At that point the valve would close to the roof and it would trap water up there. Which is the purpose of the solar-drain-down three-way valve. It "senses" when the filter pump is on, and acts like a normal three-way, either bypassing the panels or sending water to them, based on the controller's commands. At the end of the filter pump run, the pressure in the valve is released and the drain-down component opens up to let water through. That water drains out thorough the return side of your plumbing (or should). Seeing more water coming down from the roof when you manually open the solar valve would be expected, as you're essentially widening the opening. The drain-down opening is much smaller, so takes longer than working the valve.
I don't know if you could program your valve to open after the pump is off. But technically that's a kludge work-around because it's not designed to have to do so. That's the job of the drain-down valve. It's not unheard of that you would be missing the drain-down three-way, and a normal three-way was used, either by mistake or ignorance. When I bought my parts I was first sold a normal three-way and was just lucky that I noticed it before gluing it in. So it happens.
I would maybe first try to ascertain what valve you have. Can you find a part/model numbers on it? Can you look all around it? If so, you could look up what you have. And if it is a drain-down, you could get a hold of a parts drawing and then open it open to see what's going on. Identify and inspect the drain down port to see if it looks right and works right. That step and the VRV step and the check valve inspection, might turn up the problem.
Did it ever not have this problem. Did it work better previously, or are you just discovering this? As I mentioned, it's quite possible you had a bad install (or maybe it was a DIY job) and whoever did it didn't know to slant the panels and use a drain-down three way... good luck. Keep us in the loop. Do post pics of your pad plumbing, maybe something will turn up.