As Reggie mentioned, ditch the chlorinator. It does nothing but cause problems with highly concentrated acidic water. My personal preference would be to have the SWCG before the automated spa/pool return valve, and not in place of the chlorinator because you will not be able to send chlorinated water to the spa, except through the makeup line that is currently after the chlorinator. As I mentioned before, leaving that makeup line turned on all the time will cause excessive pH rise. Your in-floor system will cause the spa to overflow enough as it is, when it is running. And that may be enough to keep the chlorinated water in the spa (it is for mine), so maybe I'm overthinking the SWCG location.
Maybe one of the other equipment minded folks will jump in with some thoughts as well.
I think the SWCG would fit in either location. So I think you are safe either way.
The other thing you should really consider is removing the UV system. The UV does nothing to actually sanitize your pool, and actually removes some of the chlorine you are trying to keep in there. Here is some more reading you can do on it.
UV Systems - Further Reading
At a minimum, just don't replace the bulb when it goes bad. Oh yeah, you have no idea when it goes bad because you can't test it to see when your UV production is too low.
I bought into the UV/Ozone thing when I had my pool built. My PB didn't push them but just had them as an option and I didn't do enough research ahead of time, and went for it. In the grand scheme of things, it was chump change, but still would have been nice to not have had to remove them from the plumbing setup myself.
--Jeff