Sorry internet has been out here for the last 8 hours or so, Jason it appears that there is some variation in the instructions online on placement of the sensors depending on brand of controller / solar panel, however all the controller work about the same, the sensor is to measure available heat at the panel, most solar controllers with activate at a about 3 degree F or about 1.5 degree C temperature increase at the panel over the pool water. And turn off when temperature at panel gets within about 1 degree F or .5 degree C of matching the pool temperature.
Upon thought my guess is this is a matter of weighting of different factors, mounting so it is not touching the panel has the advantage of not doing rapid cycling of the controls in case of very high water flow through the panels since most solar panel installation guides include sections saying flow should be set by flow meter or by set temperature rise of about 1-2 degrees F some even say up to 5 degree F.
Where those suggesting mounting in contact with panels are more concerned about not loosing heat to potential wind and radiation cooling, etc.
I suspect either way will work, at least much better than having no solar controller, but I feel a sensor in contact with the panel would provide best overall performance, at least in a well designed system with proper flow rates, and with the sensor installed near the output side of the panels.
Picture if you will a location like Jason has in AZ likely with low humidity and where temperature can rapidly drop at sunset In a case like this I can see a situation in the afternoon where a separately mounted solar sensor would still be showing available heat even though no positive heat input would be available at the panels due to a combination of convection and radiation.
I can say that my sensor is mounted in direct contact with my panel, and I have experienced no problems with short cycling of the controller with a flow rate of around 3.3 gpm per 4x12 panel (35 gpm measured by flow meter through 11 panels), which is a little less than stated optimum, but is limited by my pump operating on high speed.
Ike
p.s. looks like my internet problems continue, I had to wait for it to come back on again in order to post that message, so if disappear assume my net it out