Air in strainer lid after new plumbing

Landscaper hit plumbing with weed whacker. Used water weld and was able to get skimmers working but could not get main drain to work. Had a plumber come in and they took pipes from 3 inlets with jandy on main drain to 2 inlets (above ground) one for main drain and one for both skimmers. Now my strainer lid on pump is filled with bubbles and basket does not seem to fill all the way. And this is with main drain off.
any thoughts?
 

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