Unless of course *gulp* the line is half full of water. Perfect example of where you would get a normal static w/c reading and then a ridiculously low reading under load. But in your case, it has been like this since day one?
Tell me again why you have not called warranty???
I was relying on my pool service, who did the install of the automation and the heater. He investigated, called Pentair, told me the problem was "low gas flow" and most likely was a bad line. I trust him, but I also wanted to get a second opinion from a plumber before I spend $3000+ and rip up concrete, but the 2 plumbers that come out gave me completely different answers. I am going to get a 3rd plumber out next week. At this point I have tested the pressure at the heater inlet valve and confirmed the dynamic pressure is too low which rules out the problem being the heater. Its definitely gas supply problem.
I was also thinking water in the line but other than a leak are there other common ways that water can get in there? Moisture in the gas that can condense over time? Or I would not rule out something bizarre happening in past either I bought the house from bank foreclosure so who knows... the last owners did destroy some stuff including HVAC when they were kicked out.
But, if it is a leak then I am back to same outcome have to replace the line.