Heater making howling/whining sound

I have a Raypak 206 heater and it is making an annoying howling whining sound. I have checked the heat exchange tubes and they are clear. If I open the intake valve to suck from both the skimmer and the bottom drain the noise stops. However when I am just filtering the hot tub there is only one intake line and the heater continuously makes noise while heating the hot tub. ~ Tony
 
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